External Email - Use Caution Hi Andrew,
Thanks for this. Just a quick follow up question: does that mean I will have to recon all all the other scans that did not show this error with v7.1.1 for consistency, or will it be fine to keep them processed with v7.1.0? Thanks, Yann > On 30 Jun 2020, at 2:04 am, Hoopes, Andrew <ahoo...@mgh.harvard.edu> wrote: > > Hi Yann (and anyone else with mri_cc failures on mac), > We have a fix that we'll include in an upcoming 7.1.1 patch release. If you'd > like a quick local fix, you can update your distribution with the new version > of mri_cc by running the following commands (this might require sudo): > cd $FREESURFER_HOME/bin > rm mri_cc > curl https://surfer.nmr.mgh.harvard.edu/pub/dist/tmp_patch/mri_cc > <https://surfer.nmr.mgh.harvard.edu/pub/dist/tmp_patch/mri_cc> -O mri_cc > chmod +x mri_cc > Please let us know if this does not solve your issue. > Andrew > > From: <freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Yann Quidé > <yannqu...@gmail.com <mailto:yannqu...@gmail.com>> > Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>> > Date: Monday, June 29, 2020 at 2:35 AM > To: FS Help <freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] Error recon-all mri_cc > > External Email - Use Caution > Hi team, > > I appreciate everyone is busy, but did anyone have time to look at my subject? > It was uploaded on June 18. It’s called yannquide.tar.gz > > Thanks for your time. > > Yann > > >> On 22 Jun 2020, at 12:51 pm, Yann Quidé <yannqu...@gmail.com >> <mailto:yannqu...@gmail.com>> wrote: >> >> Hi team, >> >> I was just wondering if you received my file and if you had time to look at >> it? >> >> Thanks, >> >> Yann >> >> >>> On 18 Jun 2020, at 7:08 am, Yann Quidé <yannqu...@gmail.com >>> <mailto:yannqu...@gmail.com>> wrote: >>> >>> Hi Doug, >>> >>> Thanks for this. I sent the file; it’s called yannquide.tar.gz. >>> >>> Yann >>> >>> >>>> On 16 Jun 2020, at 11:56 pm, Douglas N. Greve <dgr...@mgh.harvard.edu >>>> <mailto:dgr...@mgh.harvard.edu>> wrote: >>>> >>>> Can you upload the subject so I can take a look? Instructions below >>>> >>>> >>>> From the linux command line, >>>> Create the file you want to upload, eg, >>>> cd $SUBJECTS_DIR >>>> tar cvfz subject.tar.gz ./subject >>>> Now log into our anonymous FTP site: >>>> ftp surfer.nmr.mgh.harvard.edu <http://surfer.nmr.mgh.harvard.edu/> >>>> It will ask you for a user name: use "anonymous" (no quotes) >>>> It will ask you for a password: use "anonymous" (no quotes) >>>> cd transfer/incoming >>>> binary >>>> put subject.tar.gz >>>> Send an email that the file has been and the name of the file. >>>> >>>> >>>> >>>> On 6/15/2020 8:28 PM, Yann Quidé wrote: >>>>> External Email - Use Caution >>>>> >>>>> Hi there, >>>>> >>>>> I am using Freesurfer v7.1.0 and encounter an error for few of my >>>>> subjects only. >>>>> Recon-all finishes with errors, and it seems this occurs during the >>>>> segmentation. >>>>> >>>>> What can I do to fix this? >>>>> >>>>> I attached the recon-all log for one of my subject. >>>>> >>>>> Thanks, >>>>> >>>>> Yann >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
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