External Email - Use Caution Hi,
I am trying to process 7T MPRAGE data (not MP2RAGE) using recon-all. In previous threads, a few people have suggested using SPM to correct for bias first and then running recon-all. Alternatively I saw a thread which suggests modifying the mri_nu_correct command https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg61913.html Can I edit the recon-all to run this alternative command and simply run recon-all? The threads are all really old and SPM is now SPM12 which integrates things. Is this modified bias correction inside FS as good as SPM ? I am mainly interested in thalamic segmentation. Are there others with the same issue? Thanks manoj Manoj Saranathan Associate Professor, Dept. of Medical Imaging University of Arizona Ph: 520-626-6531
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