The same one that you would use with the T1 stream, just make sure to include -T2pial
On 12/5/19 5:04 AM, Steve Petersen wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > > I used t2 image as input in subjects that have already been processed > without them following the instructions of the website. Although pial > surface segmentation has improved there is still some error. After > edit the brainmask.mgz file in Freeview (recon edit option), what > command should I use to correct the pial surfaces obtained after the > -T2pial flag? > > I tried to use the -autorecon-pial command to correct the edits but I > think that this command only takes into account the T1, is that right? > > > Best regards, > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
