I think that the wm edits should have worked. Can you load the rh.orig.nofix
and rh.orig to see if they encompass your edits? If not, then maybe your did
not re-run it properly.
On 10/8/2019 12:22 PM, Xiaoqian Yan wrote:
External Email - Use Caution
Dear Freesurfer experts,
I am trying to do the segmentation on a patient's T1 image. I did not get error
messages running the 'recon-all' (recon-all -i T1.nii -subjid PatientName
-all), but the segmentation over the right occipital lobe was imperfect, which
caused failures to map the functional activations in this region onto the
surface.
I tried to manually edit the wm.mgz several times, but the output did not
change a lot (please see the attached image). The patient had depth EEG
electrodes implanted in this region before, so there is a thermal lesion which
I thought could have caused the bad segmentation. Do you have any ideas about
what I can do next, or it is possible for you to help me editing the data?
Thanks in advance, best wishes
Xiaoqian
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