glad to hear it worked out (and it wasn't our fault!)
cheers
Bruce
On Wed, 4 Sep 2019,
Rovai Antonin wrote:
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Hello
I think there is a problem with the dicom files. I could not see it on the
images before mri_convert -conform but there’s definitely something weird in
there. I suspect it comes from some software that misexported the data.
Running reconall on properly imported dicom data show not problem at all…
Never mind then!
Best
Antonin
Hôpital Erasme - ULB
Cliniques universitaires de Bruxelles
Route de Lennik 808 - B - 1070 Bruxelles
S www.erasme.ulb.ac.be
Disclaimer : http://www.erasme.ulb.ac.be/email-disclaimer
On 3 Sep 2019, at 16:57, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
hmmm. Can you tar and gzip the whole subject dir and upload it to our ftp site?
On Tue, 3 Sep 2019, Rovai Antonin wrote:
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Hey
So opening only the conformed image in freeview, mricro and fsleyes constantly
gives me crazy results. Also, the wm segmentation is completely wrong so I
really think there something wrong in the file….
Best
Antonin
Hôpital Erasme - ULB
Cliniques universitaires de Bruxelles
Route de Lennik 808 - B - 1070 Bruxelles
S www.erasme.ulb.ac.be
Disclaimer : http://www.erasme.ulb.ac.be/email-disclaimer
On 3 Sep 2019, at 15:55, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
Hi Antonin
hmmm. Can you try *only* loading the conformed image and seeing how it looks?
freeview will use one of the images as the basis for it's display coordinates,
which can cause apparent slicing artifacts that are only display issues for
other volumes.
cheers
Bruce
On Tue, 3 Sep 2019, Rovai Antonin wrote:
External Email - Use Caution
Hello again
I have the following issue when running mri_convert. When using the option
-conform option (as in the reconall pipeline), the sag slices seems to be
shifted at some point (see attached pictures). What is happening?
By the way the option description is not super clear, could you please give
some extra details?
Best
Antonin
[IMAGE][IMAGE]
Hôpital Erasme
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