External Email - Use Caution Hey
So opening only the conformed image in freeview, mricro and fsleyes constantly gives me crazy results. Also, the wm segmentation is completely wrong so I really think there something wrong in the file…. Best Antonin Hôpital Erasme - ULB Cliniques universitaires de Bruxelles Route de Lennik 808 - B - 1070 Bruxelles S www.erasme.ulb.ac.be Disclaimer : http://www.erasme.ulb.ac.be/email-disclaimer > On 3 Sep 2019, at 15:55, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Antonin > > hmmm. Can you try *only* loading the conformed image and seeing how it looks? > freeview will use one of the images as the basis for it's display > coordinates, which can cause apparent slicing artifacts that are only display > issues for other volumes. > > cheers > Bruce > > On Tue, 3 Sep 2019, Rovai Antonin wrote: > >> External Email - Use Caution >> Hello again >> I have the following issue when running mri_convert. When using the option >> -conform option (as in the reconall pipeline), the sag slices seems to be >> shifted at some point (see attached pictures). What is happening? >> By the way the option description is not super clear, could you please give >> some extra details? >> Best >> Antonin >> [IMAGE][IMAGE] >> Hôpital Erasme >> Lien vers Disclaimer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
