External Email - Use Caution Dear Emma,
to see the labels for native space data or surfaces (e.g., <subject>/surf/lh.thickness), you should use the $SUBJECTS_DIR/<subject>/label/?h.aparc.annot files. For data that has been mapped to fsaverage (e.g., lh.thickness.fwhm10.fsaverage.mgh), you should use the fsaverage versions in $FREESURFER_HOME/subjects/fsaverage/label/?h.aparc.annot. Unless something went wrong with the registration, they both should look fine. Best, Tim > On May 11, 2019 at 4:53 PM "Bunting, Emma" <[email protected]> wrote: > > > External Email - Use Caution > > Hi Freesurfer experts, > > Does reconall register each T1 to fsaverage space? > > And if yes, are the Desikan-Killany and Destrieux atlas labels still > applicable? > > I am asking because I noticed that when I overlayed the Desikan-Killany atlas > onto our reconall outputs they didn’t seem to align properly, > > Thanks, > > Emma > > Sent from Mail<https://go.microsoft.com/fwlink/?LinkId=550986> for Windows 10 > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
