External Email - Use Caution Dear freesurfer experts,
I want to create an annot from the output of PALM, the vertexwise file corrected by TFCE-FWEp. The values of this files are in 'p-values'. However, the mri_surfcluster has some problems: it could not recognize the fsaverage and it shows a problem with the 'locale' also. I have permissions of 'write' and 'read' in the fsaverage folder. I use the last dev version,but also it occurs with the stable version of FS 6.0. I send you the command, with the outputs and the errors. *>$ mri_surfcluster --in ./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz --thmin 0.99 --hemi rh --subject fsaverage --sign pos --surf white --oannot /media/Data/PEH/NEW_FS_analysis/PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.annot* *Could not set locale* *No such file or directory* *Could not set locale* *thsign = pos, id = 1* *version $Id: mri_surfcluster.c,v 1.60 2016/11/01 19:49:22 greve Exp $* *hemi = rh* *srcid = ./PALM_results/rh_thickness_n34_10000_PALM_tfce_tstat_fwep.mgz* *srcsubjid = fsaverage* *srcsurf = white* *srcframe = 0* *thsign = pos* *thmin = 0.99* *thmax = -1* *fdr = -1* *minarea = 0* *xfmfile = talairach.xfm* *nth = -1* *subjectsdir = /media/Data/PEH/NEW_FS_analysis* *FixMNI = 1* *------------- XFM matrix (RAS2RAS) ---------------* */media/Data/PEH/NEW_FS_analysis/fsaverage/mri/transforms/talairach.xfm* * 1.00000 0.00000 0.00000 0.00000;* * 0.00000 1.00000 0.00000 0.00000;* * 0.00000 0.00000 1.00000 0.00000;* * 0.00000 0.00000 0.00000 1.00000;* *----------------------------------------------------* *Reading source surface /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white* *MRISread(): could not open file* *No such file or directory* *mri_surfcluster: could not read surface /media/Data/PEH/NEW_FS_analysis/fsaverage/surf/rh.white* *No such file or directory* *>$ more error.log* *Could not set locale* *MRISread(): could not open file* Thank you in advance -- /**********************************************************\ Francisco Javier Navas Sánchez Laboratorio de Imagen Médica U.M.C.E. Hospital General Universitario Gregorio Marañón Dr Esquerdo 46, 28007 Madrid, Spain Phone : (+34) 91 426 50 67 Fax: (+34) 91 426 5108 e-mail:jna...@hggm.es http://image.hggm.es
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