Have you looked at the images to verify that there are no major problems with it? Can you run it outside of the HCP pipeline to make sure it is not an interaction?
On 4/8/19 12:52 PM, Jayasekera, Dinal wrote: > > External Email - Use Caution > > Dear all, > > > I have been running version 4 of the HCP Pipelines which now used > FreeSurfer 6.0. I get the following error when running recon-all using > their FreeSurferPipelineBatch script: > > > /nu_evaluate: crashed while running minc_modify_header (termination > status=134)/ > /nu_correct: crashed while running nu_evaluate (termination status=65280)/ > /ERROR: nu_correct/ > > I didn't get this error previously when running FreeSurfer 5.3.0 on > the same set of data. Are the MNI tools distributed through FreeSurfer > 6.0 sensitive to the operating system and its version? Does anyone > have a record of it working on an Ubuntu 14.04 OS? > > > 1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0 > 2) Platform: Ubuntu 14.04 > 3) recon-all.log: see attached > > Kind regards, > > *Dinal Jayasekera <https://dinaljay.weebly.com/>* > * > * > PhD Candidate | InSITE Fellow <https://www.insitefellows.org/> > Ammar Hawasli Lab <https://hawaslilab.weebly.com/> > Department of Biomedical Engineering > <https://bme.wustl.edu/Pages/default.aspx> | Washington University in > St. Louis <https://wustl.edu/> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
