External Email - Use Caution
Hi Douglas!
Thank you for the response. I figured out it was simply an issue with the
pathing to the register.dat file!
Thanks,
*Daniel Callow*
*PhD Student, Neuroscience and Cognitive Science*
Exercise for Brain Health Lab
University of Maryland, College Park
*ddcc2...@gmail.com <ddcc2...@gmail.com>*
443-254-6298
On Tue, Feb 19, 2019 at 3:52 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> what do you get when you run
> ls -l /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat
>
> On 2/19/19 8:44 AM, Daniel Davidson Callow wrote:
> >
> > External Email - Use Caution
> >
> > Hello,
> >
> > I ran a successful dt_recon and then wanted to use
> >
> > mri_vol2vol --mov $subj_dir/dtrecons/${subj}.${cond}/lowb.nii.gz
> > --targ $subj_dir/diffusion_recons/${subj}.${cond}/mri/aparc+aseg.mgz
> > --inv --interp nearest --o
> > $subj_dir/dtrecons/${subj}.${cond}/aparc+aseg2diff.nii.gz --reg
> > $subj_dir/dtrecon/${subj}.${cond}/register.dat --no-save-reg
> >
> >
> > to get the anatomical segmentations into diffusion space. However,
> > when running the above code I get the following error message?
> >
> >
> > echo subj =AES139 , cond =Rest
> >
> > subj =AES139 , cond =Rest
> >
> > set echo
> >
> > cd /Volumes/DANIEL/dti_freesurf
> >
> > mri_vol2vol --mov
> > /Volumes/DANIEL/dti_freesurf/dtrecons/AES139.Rest/lowb.nii.gz --targ
> >
> /Volumes/DANIEL/dti_freesurf/diffusion_recons/AES139.Rest/mri/aparc+aseg.mgz
>
> > --inv --interp nearest --o
> > /Volumes/DANIEL/dti_freesurf/dtrecons/AES139.Rest/aparc+aseg2diff.nii.gz
> > --reg /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat
> > --no-save-reg
> >
> > regio_read_register(): No such file or directory
> >
> > Could not open
> > /Volumes/DANIEL/dti_freesurf/dtrecon/AES139.Rest/register.dat
> >
> >
> > Matrix from regfile:
> >
> > MatrixPrint: mat = NULL!
> >
> > No such file or directory
> >
> >
> > I have attached an example register.dat file in case that is the issue.
> >
> >
> > also the output for ls -l register.dat
> >
> > -rwxrwxrwx1 administratorstaff323 Feb 18 13:59 register.dat
> >
> >
> > Any advice with troubleshooting is greatly appreciated!
> >
> >
> > Best,
> >
> > *Daniel Callow*
> > /PhD Student, Neuroscience and Cognitive Science/
> > Exercise for Brain Health Lab
> > University of Maryland, College Park
> > dcal...@umd.edu <mailto:dcal...@gmail.com>
> > 443-254-6298
> >
> >
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>
>
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