Hi Francesca
sorry, I defer to Doug on the details of mri_vol2vol.
cheers
Bruce
On Tue, 12 Feb 2019,
Francesca Strappini wrote:
External Email - Use Caution
Thank you for the reply!
I run:
mri_vol2vol --reg register.dat --mov func_data.nii.gz --targ
/usr/local/freesurfer/subjects/sub3/mri/T1.mgz --o
func_data_registered2T1.nii.gz --no-resample
Then I checked the registration and it seems that the original run is better
aligned to the T1 than
the registered one. Maybe am I not running mri_vol2vol correctly?
Thanks!
Best
Il giorno mar 12 feb 2019 alle ore 02:19 Bruce Fischl
<fis...@nmr.mgh.harvard.edu> ha scritto:
Hi Francesca
check out the --no-resample option in mri_vol2vol. It just changes the
header, so I think should do what you want.
cheers
Bruce
On Tue, 12 Feb 2019, Francesca Strappini wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer's experts,
>
> I would like to register some functional data to the T1, that were
collected in
separate days.
> I used bbregister:
>
> bbregister --s sub3 --mov func_data.nii.gz - --reg register.dat
--init-coreg --t1
>
> Now, I would like to resample the data based on the register.dat
without upsampling
and keeping the
> same FoV (3x3x3 mm; 64 64 50). Is it doable?
>
> Thanks!
> Best
>
>
> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strapp...@weizmann.ac.il
>
>_______________________________________________
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--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strapp...@weizmann.ac.il
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