If you want to test it out yourself, you can get it from ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
On 2/4/19 6:09 AM, Glasser, Matthew wrote: > > External Email - Use Caution > > There is a little more testing we are doing. > > Matt. > > From: Shachar Gal <gal.shac...@gmail.com <mailto:gal.shac...@gmail.com>> > Date: Monday, February 4, 2019 at 3:32 AM > To: Matt Glasser <glass...@wustl.edu <mailto:glass...@wustl.edu>> > Cc: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>>, Ido Tavor > <idota...@gmail.com <mailto:idota...@gmail.com>> > Subject: Re: problem using recon-all > > hey, > is there any update regarding the release of the FreeSurfer 6 > HCP-compatible version? > > cheers, > Shachar > > On Mon, 14 Jan 2019 at 14:58 Shachar Gal <gal.shac...@gmail.com > <mailto:gal.shac...@gmail.com>> wrote: > > thanks, > hope it'll work > anyway, looking forward for the version 6 release > > cheers, > Shachar > > On Mon, 14 Jan 2019 at 14:08 Glasser, Matthew <glass...@wustl.edu > <mailto:glass...@wustl.edu>> wrote: > > Ubuntu 14.04 should still work. > > Matt. > > From: Shachar Gal <gal.shac...@gmail.com > <mailto:gal.shac...@gmail.com>> > Date: Monday, January 14, 2019 at 5:43 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>>, Matt Glasser > <glass...@wustl.edu <mailto:glass...@wustl.edu>>, Ido Tavor > <idota...@gmail.com <mailto:idota...@gmail.com>> > Subject: Re: problem using recon-all > > if the problem is with the versions, maybe downgrading my OS > for now will do the trick? do you happen know what is the > latest ubuntu that is compatible with the 5.3-HCP version? > does this also occur in centOS? > > thanks > > On Sun, 13 Jan 2019 at 17:46 Shachar Gal > <gal.shac...@gmail.com <mailto:gal.shac...@gmail.com>> wrote: > > hello, > I using the HCP FreeSurfer Pipeline (using FreeSurfer > 5.3-HCP version) on ubuntu, and I encounter this error > (copying from the recon-all.log) > _______________________________________ > #@# Talairach Sun Jan 13 17:35:07 IST 2019 > /home/shachar/piano_hcp/102/102/mri > > mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 > --no-rescale --i orig.mgz --o orig_nu.mgz > > Linux maestro 4.15.0-43-generic #46-Ubuntu SMP Thu Dec 6 > 14:45:28 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s 102 exited with ERRORS at Sun Jan 13 17:35:08 > IST 2019 _______________________________________ > > i'm a bit confused by the lack of error descriptions, and > would appreciate any leads for solving it :) > > Shachar > > > ------------------------------------------------------------------------ > > The materials in this message are private and may contain > Protected Healthcare Information or other information of a > sensitive nature. If you are not the intended recipient, be > advised that any unauthorized use, disclosure, copying or the > taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this > email in error, please immediately notify the sender via > telephone or return mail. > > ------------------------------------------------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If > you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying or the taking of any action in reliance on > the contents of this information is strictly prohibited. If you have > received this email in error, please immediately notify the sender via > telephone or return mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
