Hi Stephanie
can you show us an example of what you mean? And also give us details
about what FreeSurfer version you are using and what data you are
acquiring?
cheers
Bruce
On Mon, 14 Jan 2019, Stephanie Otto wrote:
External Email - Use Caution
Greetings Freesurfer Team,
We are working on quality checking reconstructions and there seems to be a
common problem area
around the temporal lobes where the white matter surface extends beyond the
pial surface, or the
pial surface just looks off. We know this is a difficult area to reconstruct
and we aren't entirely
sure how to correct for this. We want to avoid interfering with the resulting
data. Can you instruct
us on how we should proceed with this kind of correction (i.e. control points
vs fill voxels, etc.)?
If we are looking at temporal lobe structures, how much are these areas
affected (or something like
the grey matter volume)? Is there a standard protocol for dealing with issues
such as these? Thanks
for all your help and support!
Best,
Stephanie Otto
Academic Advisor, Department of Psychology
Graduate Student, Cognitive and Brain Sciences Program
Mack Social Science, Room 414
University of Nevada, Reno
so...@nevada.unr.edu
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