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Hello FSL and Freesurfer Experts,
We are trying to find the paths between 5 fMRI ROIs (seeds).
We are using the --network option.
How do we go about thresholding the fdt_path.nii.gz?
Thanks so much,
Joe
probtrackx2 --network -x ${dtidir}/seeds.txt -l --onewaycondition -c 0.2 -S
2000 --steplength=0.5 -P 5000 \
--fibthresh=0.01 --distthresh=0.0 --sampvox=0.0
--avoid=${dtidir}/not_WM.nii.gz \
--forcedir --opd -s ${dtidir}.bedpostX/merged -m
${dtidir}.bedpostX/nodif_brain_mask.nii.gz \
--dir=${dtidir}/FRONTAL_PARIETAL_TRAX
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