External Email - Use Caution Yes, this is super-helpful. Thank you so much.
Yerong Quoting "Greve, Douglas N.,Ph.D." <dgr...@mgh.harvard.edu>: > you might try this page > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/DiffusionV6.0 > > On 12/30/18 1:45 AM, Yerong Li wrote: >> External Email - Use Caution >> Dear FreeSurfer experts: >> I am trying to map ./mri/aparc.a2009s+aseg.mgz and >> ./mri/aparc+aseg.mgz into DTI file. >> Let's say, we have a DTI file with its b-vectors: >> ./bvals >> ./bvecs >> ./data.nii.gz >> >> I am trying to use the command from this webpage: >> https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat >> >> So I used the command : >> mri_label2vol --seg aparc+aseg.mgz --temp ./data.nii.gz --o >> dk-in-rawavg.mgz --regheader aparc+aseg.mgz >> >> The output file seems not very reasonable. Could you help me with this? >> >> Yerong >> ================================== >> Can you be more specific about which files you want to map into your DWI >> space? Eg, if you want to map wmparc.mgz, then use mri_label2vol. You >> will need a registration file which you can obtain with bbregister >> >> >> On 12/05/2018 02:34 AM, Maedeh Khalilian wrote: >>> >>> External Email - Use Caution >>> >>> Dear FreeSurfer experts, >>> I have a parcellation and a whole brain white matter files which are >>> the outputs of FreeSurfer. >>> I want to register them to my DWI. I mean I want my parcellation and >>> white matter to be in the physical space of my DWI. >>> Can FreeSurfer do it for me? >>> If not , can you suggest me a toolbox that can do it fast? >>> I would be grateful if u could help me. >>> Cheers, >>> Maedeh, >>> >>> >> > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
