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Dear FreeSurfer experts:
I am trying to map ./mri/aparc.a2009s+aseg.mgz and
./mri/aparc+aseg.mgz into DTI file.
Let's say, we have a DTI file with its b-vectors:
./bvals
./bvecs
./data.nii.gz
I am trying to use the command from this webpage:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
So I used the command :
mri_label2vol --seg aparc+aseg.mgz --temp ./data.nii.gz --o
dk-in-rawavg.mgz --regheader aparc+aseg.mgz
The output file seems not very reasonable. Could you help me with this?
Yerong
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Can you be more specific about which files you want to map into your DWI
space? Eg, if you want to map wmparc.mgz, then use mri_label2vol. You
will need a registration file which you can obtain with bbregister
On 12/05/2018 02:34 AM, Maedeh Khalilian wrote:
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Dear FreeSurfer experts,
I have a parcellation and a whole brain white matter files which are
the outputs of FreeSurfer.
I want to register them to my DWI. I mean I want my parcellation and
white matter to be in the physical space of my DWI.
Can FreeSurfer do it for me?
If not , can you suggest me a toolbox that can do it fast?
I would be grateful if u could help me.
Cheers,
Maedeh,
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