External Email - Use Caution
Doctor i opened annotation file by read_annotation.m, but then i looked your
page, firstly thanks for your work!
'vertex_key.m' file is worked but not exactly I wanted, get.Seg.Coords.m file
doesn't work and i think an example can be helpful. (for every m file)
Best,
Ece
________________________________
Gönderen: Mcnorgan, Christopher <cpmcn...@buffalo.edu> adına
freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu>
Gönderildi: 6 Kasım 2018 Salı 20:05
Kime: Freesurfer Mailing List
Konu: Re: [Freesurfer] Desikan Atlas in volume space (ece ulug)
External Email - Use Caution
Hi Ece,
I believe you will find a walkthrough of the steps to do exactly what you want
done on my lab wiki:
http://ccnlab.psy.buffalo.edu/wiki/index.php/Annotation_Coordinates
Hope this helps,
Chris
/**********************************************
* Chris McNorgan
* Assistant Professor
* Department of Psychology
* University at Buffalo,
* The State University of New York
* http://ccnlab.buffalo.edu/
* Office: 716.645.0236
* Lab: 716.645.0222
**********************************************/
On Nov 6, 2018, at 12:00 PM,
freesurfer-requ...@nmr.mgh.harvard.edu<mailto:freesurfer-requ...@nmr.mgh.harvard.edu>
wrote:
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Today's Topics:
1. Ynt: Ynt: ?lt: Desikan Atlas in volume space (ece ulug)
From: ece ulug <eceulu...@hotmail.com<mailto:eceulu...@hotmail.com>>
Subject: [Freesurfer] Ynt: Ynt: İlt: Desikan Atlas in volume space
Date: November 6, 2018 at 6:37:17 AM EST
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
External Email - Use Caution
Exactly. I cannot find in this file but i found lh.aparc.label and
lh.aparc.annot files in freesurfer/subjects/fsaverage/label. Actually i told in
my previous message. I need coordinates for generate caudalanteriorcingulate
mask in coordinate system.
________________________________
Gönderen: Bruce Fischl
<fis...@nmr.mgh.harvard.edu<mailto:fis...@nmr.mgh.harvard.edu>> adına
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
Gönderildi: 6 Kasım 2018 Salı 00:45
Kime: Freesurfer support list
Konu: Re: [Freesurfer] Ynt: İlt: Desikan Atlas in volume space
I don't think there is an lh.aparc.label file - I don't know what it
would be if it existed.
Maybe we can take a step back and you can let us know what you are trying
to achieve?
On Mon, 5 Nov 2018, ece ulug wrote:
>
> External Email - Use Caution
>
> Thanks for your reply doctor. Actually I want to access Desikan K. Atlas
> coordinates as x, y, z.
> (each regions. for example caudalanteriorcingulate).
>
>
> In that case, one expert said that ; the closest to what you want is probably
> $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.label. You can open it with
> a text editor. Then
> you should cross-check with
> $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.annot for the actual
> labels of those vertices. The .annot file can be opened in Matlab with the
> read_annotation command
> from FreeSurfer.
>
>
> What do you recommend?
> Ece
>
> ____________________________________________________________________________________________________
> Gönderen: Bruce Fischl
> <fis...@nmr.mgh.harvard.edu<mailto:fis...@nmr.mgh.harvard.edu>> adına
> freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
> Gönderildi: 5 Kasım 2018 Pazartesi 20:18
> Kime: Freesurfer support list
> Konu: Re: [Freesurfer] İlt: Desikan Atlas in volume space
> Hi Ece
>
> for a given subject the Desikan parcellation is sampled into the volume
> alread in the file aparc+aseg.mgz in the subject's mri dir. Is that what
> you are looking for?
>
> cheers
> Bruce
>
> On Mon, 5 Nov 2018, ece ulug wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear Experts,
> >
> >
> > I am very beginner in Freesurfer, and I want to use 'read_annotation'
> > function but i don't know what is the next step. I added the Matlab
> > screenshoot.
> >
> >
> > Additionally; 'read_curv' function don't work in Matlab. I added it.
> >
> >
> > Thanks in advance
> >
> > Ece
> >
> >
> >
> >
>
>
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