External Email - Use Caution Exactly. I cannot find in this file but i found lh.aparc.label and lh.aparc.annot files in freesurfer/subjects/fsaverage/label. Actually i told in my previous message. I need coordinates for generate caudalanteriorcingulate mask in coordinate system.
________________________________ Gönderen: Bruce Fischl <fis...@nmr.mgh.harvard.edu> adına freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> Gönderildi: 6 Kasım 2018 Salı 00:45 Kime: Freesurfer support list Konu: Re: [Freesurfer] Ynt: İlt: Desikan Atlas in volume space I don't think there is an lh.aparc.label file - I don't know what it would be if it existed. Maybe we can take a step back and you can let us know what you are trying to achieve? On Mon, 5 Nov 2018, ece ulug wrote: > > External Email - Use Caution > > Thanks for your reply doctor. Actually I want to access Desikan K. Atlas > coordinates as x, y, z. > (each regions. for example caudalanteriorcingulate). > > > In that case, one expert said that ; the closest to what you want is probably > $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.label. You can open it with > a text editor. Then > you should cross-check with > $FREESURFER_HOME/subjects/fsaverage/surf/lh.aparc.annot for the actual > labels of those vertices. The .annot file can be opened in Matlab with the > read_annotation command > from FreeSurfer. > > > What do you recommend? > Ece > > ____________________________________________________________________________________________________ > Gönderen: Bruce Fischl <fis...@nmr.mgh.harvard.edu> adına > freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> > Gönderildi: 5 Kasım 2018 Pazartesi 20:18 > Kime: Freesurfer support list > Konu: Re: [Freesurfer] İlt: Desikan Atlas in volume space > Hi Ece > > for a given subject the Desikan parcellation is sampled into the volume > alread in the file aparc+aseg.mgz in the subject's mri dir. Is that what > you are looking for? > > cheers > Bruce > > On Mon, 5 Nov 2018, ece ulug wrote: > > > > > External Email - Use Caution > > > > Dear Experts, > > > > > > I am very beginner in Freesurfer, and I want to use 'read_annotation' > > function but i don't know what is the next step. I added the Matlab > > screenshoot. > > > > > > Additionally; 'read_curv' function don't work in Matlab. I added it. > > > > > > Thanks in advance > > > > Ece > > > > > > > > > >
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