External Email - Use Caution        

Dear community,

My group is using the latest version of condor clustering to process our data 
on OS X.

We have a bash script that calls freesurfer to run our HCP pipelines. I can run 
the script to completion when running it locally on each of the clustered 
machines, however when submitting the job I get the following error

Can’t locate MNI/Startup.pm in @INC (you may need to install the MNI::Startup 
module) (@INC contains: 
/Applications/freesurfer/mni/lib/../System/Library/Perl/5.8.6 
/Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 
/Network/Library/Perl/5.18/darwin-thread-multi-2level 
/Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2 
/System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 
/System/Library/Perl/Extras/5.18/darwin-thread-multi-2level 
/System/Library/Perl/Extras/5.18 .) at 
/Applications/freesurfer/mni/bin/nu_correct line 37.
BEGIN failed--compilation aborted at 
/Applications/freesurfer/mni/bin/nu_correct line 37.
(standard_in) 2: comparison in expression

 Can anyone suggest a solution?
Thanks
J

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Reply via email to