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Dear All,
I tried recon-all with/without T2 image using FS 5.3.0. Then I found that
the aseg stats and aparc stats with/without T2 are exactly the same. When I
check the pial surfaces, I can see that they are very similar but not the
same. So is it reasonable to see exactly the same stats?
An example of the pial surfaces with/without T2 is attached here. The red
line is lh.pial with T2 and the yellow line is the lh.pial without T2
My command for recon-all with T2 is: recon-all -s ${subject} -i T1.nii -all
-T2 T2.nii -T2pial -sd ${T2_dir}
My command for recon-all without T2 is: recon-all -s ${subject} -i T1.nii
-all -sd ${T1_dir}
Thanks,
Jianzhong
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