Hi Don, sorry for the delay. It is using the talairach.xfm files in both subjects to do the mapping. doug
On 08/24/2018 11:40 AM, Krieger, Donald N. wrote: > > External Email - Use Caution > > Dear freesurfers, > > I didn’t see a response to this but I might have missed it. > > In any case it looks like it’s working ok. > > I found an error in what I was doing which was confusing things. > > Best – Don > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Krieger, Donald N. > *Sent:* Wednesday, August 22, 2018 8:35 PM > *To:* 'freesurfer@nmr.mgh.harvard.edu' <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] mri_label2label dependencies > > * External Email - Use Caution * > > Dear freesurfers, > > I am using mri_label2label with –regmethod volume . > > The only other switches I am using are minimal as you can see below. > > The thing is that none of the freesurfer stuff is in the srcsubject’s > directory. > > Why is there no error message? > > Where is it getting the stuff below the line: Src2TrgVolReg: > ----------- ? > > Actually, I just need to know what to put into those directories so > this function will work properly. > > I see from the documentation that I need mri/transforms/talairach.xfm > in both the src and trg subject directories. > > Is there anything else that needs to be there? > > mri_label2label --trgsubject 174 --srcsubject subNo1 --trglabel > /dev/shm/32089_labels --srclabel /dev/shm/32089_tmp0-2 --regmethod volume > > srclabel = /dev/shm/32089_tmp0-2 > > srcsubject = subNo1 > > trgsubject = 174 > > trglabel = /dev/shm/32089_labels > > regmethod = volume > > usehash = 1 > > Use ProjAbs = 0, 0 > > Use ProjFrac = 0, 0 > > DoPaint 0 > > SUBJECTS_DIR /usr/local/pkg/freesurfer//subjects > > FREESURFER_HOME /usr/local/pkg/freesurfer/ > > Loading source label. > > Found 33 points in source label. > > Starting volumetric mapping 33 points > > Src2TrgVolReg: ----------------- > > 0.963 -0.002 -0.044 0.330; > > 0.034 0.930 -0.328 -0.544; > > 0.044 0.285 0.919 13.268; > > 0.000 0.000 0.000 1.000; > > 0 55.0000 17.0000 23.0000 52.2444 9.6043 41.6544 > > 1 47.0000 1.0000 39.0000 43.8696 -10.7903 51.4429 > > 2 52.0000 -4.0000 28.0000 49.1826 -11.6594 40.1300 > > 3 55.0000 17.0000 16.0000 52.5536 11.8998 35.2230 > > 4 50.0000 -10.0000 23.0000 47.4912 -15.6659 33.7380 > > Writing label file /dev/shm/32089_labels 33 > > mri_label2label: Done > > Thanks - Don > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
