External Email - Use Caution
Dear freesurfers,
I didn't see a response to this but I might have missed it.
In any case it looks like it's working ok.
I found an error in what I was doing which was confusing things.
Best - Don
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Krieger, Donald N.
Sent: Wednesday, August 22, 2018 8:35 PM
To: 'freesurfer@nmr.mgh.harvard.edu' <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] mri_label2label dependencies
External Email - Use Caution
Dear freesurfers,
I am using mri_label2label with -regmethod volume .
The only other switches I am using are minimal as you can see below.
The thing is that none of the freesurfer stuff is in the srcsubject's directory.
Why is there no error message?
Where is it getting the stuff below the line: Src2TrgVolReg: ----------- ?
Actually, I just need to know what to put into those directories so this
function will work properly.
I see from the documentation that I need mri/transforms/talairach.xfm in both
the src and trg subject directories.
Is there anything else that needs to be there?
mri_label2label --trgsubject 174 --srcsubject subNo1 --trglabel
/dev/shm/32089_labels --srclabel /dev/shm/32089_tmp0-2 --regmethod volume
srclabel = /dev/shm/32089_tmp0-2
srcsubject = subNo1
trgsubject = 174
trglabel = /dev/shm/32089_labels
regmethod = volume
usehash = 1
Use ProjAbs = 0, 0
Use ProjFrac = 0, 0
DoPaint 0
SUBJECTS_DIR /usr/local/pkg/freesurfer//subjects
FREESURFER_HOME /usr/local/pkg/freesurfer/
Loading source label.
Found 33 points in source label.
Starting volumetric mapping 33 points
Src2TrgVolReg: -----------------
0.963 -0.002 -0.044 0.330;
0.034 0.930 -0.328 -0.544;
0.044 0.285 0.919 13.268;
0.000 0.000 0.000 1.000;
0 55.0000 17.0000 23.0000 52.2444 9.6043 41.6544
1 47.0000 1.0000 39.0000 43.8696 -10.7903 51.4429
2 52.0000 -4.0000 28.0000 49.1826 -11.6594 40.1300
3 55.0000 17.0000 16.0000 52.5536 11.8998 35.2230
4 50.0000 -10.0000 23.0000 47.4912 -15.6659 33.7380
Writing label file /dev/shm/32089_labels 33
mri_label2label: Done
Thanks - Don
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
