was there something other than CC that had 0 number of verts?
b'unknown' contains: 6695
b'insula' contains: 3551
b'temporalpole' contains: 552
b'precuneus' contains: 5189
b'frontalpole' contains: 351
b'transversetemporal' contains: 695
b'supramarginal' contains: 5915
b'superiorfrontal' contains: 9823
b'superiortemporal' contains: 5738
b'parstriangularis' contains: 2286
b'rostralmiddlefrontal' contains: 7656
b'medialorbitofrontal' contains: 2167
b'isthmuscingulate' contains: 1359
b'superiorparietal' contains: 7060
b'lateraloccipital' contains: 7440
b'lateralorbitofrontal' contains: 3510
b'fusiform' contains: 4661
b'posteriorcingulate' contains: 1783
b'inferiorparietal' contains: 6607
b'parahippocampal' contains: 965
b'caudalanteriorcingulate' contains: 779
b'parsopercularis' contains: 2422
b'rostralanteriorcingulate' contains: 853
b'precentral' contains: 6554
b'lingual' contains: 3628
b'postcentral' contains: 6424
b'bankssts' contains: 1613
b'corpuscallosum' contains: 0
b'paracentral' contains: 2045
b'parsorbitalis' contains: 936
b'entorhinal' contains: 458
b'caudalmiddlefrontal' contains: 2994
b'pericalcarine' contains: 1564
b'inferiortemporal' contains: 5501
b'middletemporal' contains: 5220
b'cuneus' contains: 2000
On 08/27/2018 12:09 PM, Ali,Mohamed Tarek Mohamed wrote:
>
> External Email - Use Caution
>
> and what about the 0's showing up in labels?
>
> ------------------------------------------------------------------------
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu
> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
> <dgr...@mgh.harvard.edu>
> *Sent:* Monday, August 27, 2018 11:04:01 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] Parcellation labels error
> Neither the aparc nor the aparc.DKTatlas have corpus callosum labeled.
> It is labled in the aseg.mgz though
>
> On 08/27/2018 10:24 AM, Ali,Mohamed Tarek Mohamed wrote:
> >
> > External Email - Use Caution
> >
> > Hello FreeSurfer Developers,
> >
> >
> > While I am using [vec,labels,cnames] =
> > read_annotation('lh.aparc.annot'), I am getting values in labels which
> > are not found in cnames.table(:,5). These values are 0. I assigned the
> > values to the unknown area. However, when I looked at the number of
> > vertices per brain regions I found that corpuscallosum has no vertices
> > in the DK atlas.
> >
> >
> > This is my first week using a neuroimaging software and Freesurfer is
> > my first software to work on, so I just don't know if that's ok or if
> > there is something wrong.
> >
> >
> > I am attaching the output of a python code I wrote to count the number
> > of vertices per brain region in the left hemisphere of a structural
> > MRI image from our dataset.
> >
> >
> > Thanks in advance,
> >
> > *Mohamed T. Ali*
> >
> > *Ph.D. student,
> > Bioengineering,*
> >
> > *University of Louisville.*
> >
> >
> > _______________________________________________
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> > Freesurfer@nmr.mgh.harvard.edu
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