External Email - Use Caution Hello, thank you for your response, yes My terminal is in the tcsh shell so I’m not sure why it’s not working
Nada > On Aug 22, 2018, at 3:22 PM, Adam Martersteck <acmar...@gmail.com> wrote: > > External Email - Use Caution > > Are you sure you're terminal is setup in tcsh or csh? If you're using bash > instead, you want "export SUBJECTS_DIR=/project/bil/Nada" > Take a look at: > https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Mac or > https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux to see if > you may have missed something. > >> On Wed, Aug 22, 2018 at 4:37 AM Nada Naguib <nad...@bu.edu> wrote: >> External Email - Use Caution >> >> Hello, >> >> I have been using bbregister in this format >> >> bbregister —mov dkti4d.nii —s NewT2out —init-fsl —bold —lea register.lta >> >> NewT2out is the output of the free surfer processing on the T1 image and >> dkti4d.nii is the template file I want to use for the registration. >> >> it has worked before but now there is a new error >> >> ERROR: cannot find NewT2out in >> /project/iconic/apps/freesurfer/5.3.0/install/subjects >> >> even though I have already ran the command: >> >> setenv SUBJECTS_DIRECTORY /project/bil/Nada >> >> >> This path is where both NewT2out and dkti4d.nii are located. >> >> I don’t understand what is going wrong >> >> Best >> Nada >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
