External Email - Use Caution Are you sure you're terminal is setup in tcsh or csh? If you're using bash instead, you want "export SUBJECTS_DIR=/project/bil/Nada" Take a look at: https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Mac or https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux to see if you may have missed something.
On Wed, Aug 22, 2018 at 4:37 AM Nada Naguib <nad...@bu.edu> wrote: > External Email - Use Caution > > Hello, > > I have been using bbregister in this format > > bbregister —mov dkti4d.nii —s NewT2out —init-fsl —bold —lea register.lta > > NewT2out is the output of the free surfer processing on the T1 image and > dkti4d.nii is the template file I want to use for the registration. > > it has worked before but now there is a new error > > ERROR: cannot find NewT2out in > /project/iconic/apps/freesurfer/5.3.0/install/subjects > > even though I have already ran the command: > > setenv SUBJECTS_DIRECTORY /project/bil/Nada > > > This path is where both NewT2out and dkti4d.nii are located. > > I don’t understand what is going wrong > > Best > Nada > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
