External Email - Use Caution Hi Bruce,
Thank you for your reply. I will try and let you know. Best, Khoi On Thu, Jul 26, 2018 at 4:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Khoi > > I would recommend trying out version 6 and using the bigventricles flag. > It works pretty well > > cheers > Bruce > On Thu, 26 Jul 2018, Khoi Mai wrote: > > >> External Email - Use Caution >> >> Hello, >> We are trying to run two subjects through recon-all. The kicker is that >> these two have very large >> ventricles and we have been stuck at mris_fix_topology (the script >> reports about 100-ish defects for >> each). We use HPC to run the analyses but even with a walltime of 96 >> hours each, both subjects were >> unable to be finished within that time frame. My question is that is >> there any way to improve >> mris_fix_topology runtime? >> >> Subject 1: >> [IMAGE] >> >> Subject 2: >> [IMAGE] >> >> >> Thank you for your help. >> >> Best, >> >> Khoi >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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