Use the mri.2mm aseg.mgz, eg,
mri_binarize --i aseg.mgz --match 7 8 46 47 --dilate 1 --o cblummask.mgz
This will make a mask of cerebellum GM and WM and dilate it by 1 voxel.
On 7/26/18 4:49 PM, Piero Chiacchiaretta wrote:
External Email - Use Caution
Dear FS group,
I would like to restrict mri_glmfit analysis, on FS-FAST outputs, to
the cerebellum.
Thus, I’m using —mask, adding the mask of cerebellum.
To this aim I can obtain it using mri_binarize. Do you agree?
mri_binarize --i ... --match 8 --o Left_Cerebellum.nii.gz
mri_binarize --i ... --match 45 --o Right_Cerebellum.nii.gz
Which is the correct input? aparc+aseg in fsaverage? In which
dimension? mri.2mm? mri?
Thanks
Piero
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
