External Email - Use Caution Thanks Sir
2018-06-26 9:33 GMT+02:00 Giuseppe Cabras <giuseppe.cab...@uniud.it>: > Hi Ottavio, > > you can also install gnu parallel (https://www.gnu.org/software/parallel/) > and run in parallel on all your cpus with just one parallel command line: > > export SUBJECTS_DIR=/home/my/study/fs60/MRIstudy/sMRI/native > > cd /home/my/MRIdata/sMRI/native > > ls *.nii | parallel --jobs 8 recon-all -all -s {.} -i {} > > cheers, > > Giuseppe > > On 25/06/2018 23:49, Ottavio Morciano wrote: > > External Email - Use Caution > Without taskset ? Just open terminal and type recon-all -i x -s y -all for > each subjects? > > Il lun 25 giu 2018, 23:43 Douglas N. Greve <dgr...@mgh.harvard.edu> ha > scritto: > >> If you have 10 processors and enough memory, then you should run 10 >> simultaneously (ie, without using -openmp). >> >> >> On 06/25/2018 05:34 PM, Ottavio Morciano wrote: >> > >> > >> > Hi!I'am a student of medicine in Foggia,Italy.To elaborate a single >> > .nii file for a single subjects i use "recon-all -i (name of .nii >> > file) -s (name of subjects) -all -openmp 8(i have 8 core)"and to >> > finish the work is necessary 8 hours. >> > >> > Now i want elaborate 10 .nii file for 10 subjects(a file for each >> > subject).Is better to open 10 terminal and use the command recon-all >> > in each terminal without -openmp,or with -openmp?Or to use this,Now i >> > open 10 terminal BUT for every terminal i use the command Taskset to >> > assign every terminal to a core of my cpus(2 core is busy with 2 >> > recon-all....) >> > >> > Wich is the best way to finish the work more rapidly? >> > >> > Sorry for my bad english and i hope for a reply.Thanks >> > >> > Morciano Ottavio >> > >> > MD.Student >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > athttp://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > External Email - Use Caution > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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