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We are attempting to analyze archival MRI data obtained during routine clinical 
care. Unfortunately, the standard clinical MR sequences do not include 3D 
volumes. Will the freesurfer algorithm work on slice data so that each slice 
could be marked with the pial and white matter boundaries? Then, the next 
question is how to apply seg and parc templates to analyze correctly defined 
subcortical structures, and cortical regions? Has anyone tried to do this type 
of archival data analysis? Unfortunately, our standard sequences do not include 
3D volumes, so to do the retrospective work we'll need a workaround.

Thank you.

John R. Absher, MD, FAAN
GHS Neurosciences
jabs...@ghs.org<mailto:jabs...@ghs.org>
864-350-6655 (mobile)

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