hmmm, I don't. Does your disk have space on it? Can you try rerunning the
last command in the recon-all.cmd file and see if it completes?
Bruce
On Sun, 10
Jun 2018, Lee, Seonjoo wrote:
External Email - Use Caution
Hi Bruce,
recon-all did not run, and I could not figure out the problem. Do you have any
clue what could be?
The log file does not tell anything…
The command was the most simplest one (using only t1).
If you need more information to figure out the cause of this error, please let
me know.
Thank you.
-Seonjoo
====
#@# MotionCor Sat Jun 9 21:04:46 EDT 2018
Found 1 runs
subject/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
WARNING: only one run found. This is OK, but motion
correction cannot be performed on one run, so I'll
copy the run to rawavg and continue.
\n cp subject/mri/orig/001.mgz subject/mri/rawavg.mgz \n
subject
\n mri_convert subject/mri/rawavg.mgz subject/mri/orig.mgz --conform \n
mri_convert.bin subject/mri/rawavg.mgz subject/mri/orig.mgz --conform
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from subject/mri/rawavg.mgz...
TR=6.81, TE=3.16, TI=0.00, flip angle=9.00
i_ras = (-0, -1, 0)
j_ras = (-0, -0, -1)
k_ras = (1, -0, 0)
changing data type from short to uchar (noscale = 0)...
MRIchangeType: Building histogram
Reslicing using trilinear interpolation
writing to subject/mri/orig.mgz...
Darwin Seonjoos-iMac.local 17.5.0 Darwin Kernel Version 17.5.0: Mon Mar 5
22:24:32 PST 2018;
root:xnu-4570.51.1~1/RELEASE_X86_64 x86_64
recon-all -s subid exited with ERRORS at Sat Jun 9 21:04:51 EDT 2018
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