oh, that functionality is only available in 6.0. In 5.3, the temp path
is hard-coded. You can edit load_nifti.m to change the default path.
On 6/6/18 6:36 AM, Jiahe Zhang wrote:
External Email - Use Caution
/usr/local/freesurfer/stable5_3_0/bin/freesurfer
On Wed, Jun 6, 2018 at 12:23 AM, Douglas Greve <dgr...@mgh.harvard.edu
<mailto:dgr...@mgh.harvard.edu>> wrote:
what version of fs are you running?
On 6/5/18 10:02 PM, Jiahe Zhang wrote:
External Email - Use Caution
I tried both below and got the same error.
setenv TMPDIR $my_tmp_dir
setenv tmpdir $my_tmp_dir
Is doesn't seems like selxavg3-sess reads this env variable. Or
am I missing something?
On Mon, Jun 4, 2018 at 5:56 PM, Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
set the TMPDIR env variable to point anywhere you want
On 06/04/2018 02:57 PM, Jiahe Zhang wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer experts,
>
> While running selxavg3-sess on a large functional scan (7
Tesla, 768
> time points), I got these errors
>
> gzip: stdout: No space left on device
> ERROR: /tmp/tmp8187256.nii, read in 1669519272 voxels,
expected 3257077248
>
> It sounds like there wasn't enough space on /tmp for an
intermediate
> file to be written. Is there any way I can override the
default so the
> intermediate file gets written to a location that does have
enough
> storage space?
>
> Thanks,
> Jiahe
>
>
>
> --
> Jiahe Zhang
> Ph.D. Candidate
> Department of Psychology
> Northeastern University
> 617-373-2649
>
>
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--
Jiahe Zhang
Ph.D. Candidate
Department of Psychology
Northeastern University
617-373-2649
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