External Email - Use Caution I tried both below and got the same error. setenv TMPDIR $my_tmp_dir setenv tmpdir $my_tmp_dir
Is doesn't seems like selxavg3-sess reads this env variable. Or am I missing something? On Mon, Jun 4, 2018 at 5:56 PM, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > > set the TMPDIR env variable to point anywhere you want > > > > On 06/04/2018 02:57 PM, Jiahe Zhang wrote: > > > > External Email - Use Caution > > > > Dear Freesurfer experts, > > > > While running selxavg3-sess on a large functional scan (7 Tesla, 768 > > time points), I got these errors > > > > gzip: stdout: No space left on device > > ERROR: /tmp/tmp8187256.nii, read in 1669519272 voxels, expected > 3257077248 > > > > It sounds like there wasn't enough space on /tmp for an intermediate > > file to be written. Is there any way I can override the default so the > > intermediate file gets written to a location that does have enough > > storage space? > > > > Thanks, > > Jiahe > > > > > > > > -- > > Jiahe Zhang > > Ph.D. Candidate > > Department of Psychology > > Northeastern University > > 617-373-2649 > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Jiahe Zhang Ph.D. Candidate Department of Psychology Northeastern University 617-373-2649
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
