Hi Freesurfers,
I sent this help request some days ago but had some problems in receiving the
reply because of mailing list subscription issues...
Sorry for submitting this request again:
I used the command mris_preproc to have all the surfaces of my cohort
concatenated in fs average and I obtained this error message from several of my
subjects:
#@# 3/11 MS073_R01_05/Bay8_3T/fs/MS073_R01_05 Fri May 11 14:24:58 EDT 2018
--------------
-----------------------
mri_surf2surf --srcsubject MS073_R01_05/Bay8_3T/fs/MS073_R01_05 --srchemi lh
--srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg
sphere.reg --tval
/autofs/space/alicudi_002/users/mscat/users/valeria/CMEt2star/11Subj/tmp.mris_preproc.10346/MS073_R01_05.Bay8_3T.fs.MS073_R01_05.3.mgh
--sval
/autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic/MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/overlay/lh.MS073_R01_05-t2star_05iso_corr_disco_r0.8_depth0.5_fwhm3.mgh
--noreshape --no-cortex
ERROR: dimension inconsistency in source data
Number of surface vertices = 124277
Number of value vertices = 124470
Source registration surface changed to sphere.reg
Target registration surface changed to sphere.reg
srcsubject = MS073_R01_05/Bay8_3T/fs/MS073_R01_05
srcval =
/autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic/MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/overlay/lh.MS073_R01_05-t2star_05iso_corr_disco_r0.8_depth0.5_fwhm3.mgh
srctype =
trgsubject = fsaverage
trgval =
/autofs/space/alicudi_002/users/mscat/users/valeria/CMEt2star/11Subj/tmp.mris_preproc.10346/MS073_R01_05.Bay8_3T.fs.MS073_R01_05.3.mgh
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = lh
trghemi = lh
frame = 0
fwhm-in = 0
fwhm-out = 0
label-src = (null)
label-trg = (null)
OKToRevFaceOrder = 1
Reading source surface reg
/autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic//MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/lh.sphere.reg
Loading source data
I saw that the problem could be related with the sphere file and I tried
re-running -autorecon2 and -autorecon3 but it did not solve the problem.
Could you please help me out with this?
Thank you,
Valeria
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