External Email - Use Caution Douglas,
Thank you so much for your response. My atlas is nii.gz format. What should I do to get the cortical thickness, surface area and volume for various cortical regions? Thanks in advance. Best, Ting > On Apr 19, 2018, at 11:28 AM, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > > Is the atlas in GCA format? If so, then you can use gca-apply > > > On 04/19/2018 10:09 AM, Ting Li wrote: >> Hi Freesurfer Experts, >> >> We want to run recon-all with a custom atlas which is generated from >> ANTs multivariate template construction. What is the right procedure >> to run recon-all? Run recon-all to my atlas itself first and them use >> this output as a template or I use the custom template directly. I >> looked up your email database to search related topic and got lost. I >> have sent another email to your group and no response received. Please >> help me. >> >> Thanks for you time. I look forward to hearing from you. >> >> Best, >> Ting >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
