Hi David, move your intermediate volume to session_1/ifsd/001/orig.mgz
then try -bbr-int ifsd orig On 04/12/2018 04:10 AM, David Sánchez Bestué wrote: > Dear all, > > I have a problem with the command: > "preproc-sess" > > I wanted to use the Registration option to add an intermediate volume. > The only documentation I could find about it was the one that appears > with the command: "preproc-sess --help" > > Registration options > -init-fsl : use fsl to initialize bbr registration > -init-spm : use spm to initialize bbr registration (needs matlab) > -init-header : use geometry to initialize bbr registration > -bbr-int ifsd istem : use intermediate volume in sess/ifsd/RRR/istem > > > I used the last flag in my line as follows: > > preproc-sess -s session_1 -fsd bold -surface self lhrh -mni305 -fwhm 5 > -per-run -bbr-int ifsd istem > > I got this error: > > ERROR: could not determine file for ifsd/001/istem > > > It seems that the path is not working but I do not why. The relevant > paths are this: > > session_1/bold/001/f.nii > session_1/ifsd/001/istem/orig.mgz > > Any help would be really appreciated! > > Thank you all > > Bests, > > David > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
