Dear all,

I have a problem with the command:
"preproc-sess"

I wanted to use the Registration option to add an intermediate volume. The only 
documentation I could find about it was the one that appears with the command: 
"preproc-sess --help"

Registration options
  -init-fsl : use fsl to initialize bbr registration
  -init-spm : use spm to initialize bbr registration (needs matlab)
  -init-header : use geometry to initialize bbr registration
  -bbr-int ifsd istem : use intermediate volume in sess/ifsd/RRR/istem


I used the last flag in my line as follows:

preproc-sess -s session_1 -fsd bold -surface self lhrh -mni305 -fwhm 5 -per-run 
-bbr-int ifsd istem

I got this error:

ERROR: could not determine file for ifsd/001/istem


It seems that the path is not working but I do not why. The relevant paths are 
this:

session_1/bold/001/f.nii
session_1/ifsd/001/istem/orig.mgz

Any help would be really appreciated!

Thank you all

Bests,

David




_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to