Hi Anna
from your log file it looks like some other process is using more than 2/3
of the memory on your machine:
total used free shared buffers cached
Mem: 24729588 16852524 7877064 4095060 0 10543292
-/+ buffers/cache: 6309232 18420356
Swap: 0 0 0
cheers
Bruce
On Thu, 5 Apr 2018, Anna Daniels wrote:
Hi Douglas,
thank you for the quick reply! That helped for the first hard failure.
Do you have any idea what could have caused the second error message? This only
happened for some
subjects when rerunning recon-all with -autorecon2 -autorecon3, but always
resulted in this error
log:
Iterating 2 times
---------------------------------
3d normalization pass 1 of 2
white matter peak found at 110
Cannot allocate memory
Linux node098 2.6.32-696.20.1.el6.x86_64 #1 SMP Thu Jan 25 08:47:49 CST 2018
x86_64 x86_64 x86_64
GNU/Linux
recon-all -s 44538_T1_fs_edit exited with ERRORS at Do 29. Mär 01:28:15 CEST
2018
Attached you can find the respective recon-all.log file.
Thank you!
Best,
Anna
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