Can you be more specific about which step is failing and how you are verifying the failure?
On 02/21/2018 05:21 PM, Albrecht, Daniel S. wrote: > > Hello, > > > We are attempting to extract cortical thickness values from a > pre-defined ROI in MNI space. > > > Originally, we had followed the instructions detailed here: > > https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness > > for extraction in MNI space, but now wanted to extract thickness from > individual subject T1 images in native space. > > > We attempted to use the same pipeline (e.g. register native space T1 > to fsaverage) but were unable to get a good registration with several > different tools. > > > Is there a better way to do this, either by improving the registration > to fsaverage, or by transforming the ROI to native space (which we > have done) and projecting that to a surface/label? > > > Any suggestions are welcome, and we appreciate the help! > > > Cheers, > > > Dan > > VolumeRoiCorticalThickness - Free Surfer Wiki > <https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness> > surfer.nmr.mgh.harvard.edu > Cortical Thickness of a Volume-defined ROI. This page describes the > workflow to extract freesurfer cortical thickness values for a > region-of-interest (ROI) defined in ... > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
