Hi Bruce, I sent you two subject's directories through FileDrop.
Thanks! Cheers Amal ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: Wednesday, February 21, 2018 6:27 PM To: Freesurfer support list Subject: Re: [Freesurfer] Problem with cortical parcellation of rh but not lh Hi Amal we need the entire directory tree for that subject cheers Bruce On Wed, 21 Feb 2018, Amal Achaibou wrote: > > Hi, > > Yes I've seen it for multiple subjects. > > I'm using version 6. > > Here are the results for one participants, let me know if you need any other > file. > > Thanks > > > Amal > > > > > > > > ____________________________________________________________________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of > Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Sent: Thursday, February 15, 2018 8:37 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Problem with cortical parcellation of rh but not lh > Hi Amal > > this happens for multiple subjects? What version are you using? I have > only ever seen this very rarely and usually for an atypical (e.g. > multiple central sulci) folding pattern. Can you upload a subject so I > can take a look? > > cheers > Bruce > On Tue, 13 Feb 2018, Amal Achaibou wrote: > > > > > Hello, > > > > I'm new to freesurfer and have been trying to use it for cortical > > parcellation of individual T1s > > running recon-all -s subID -i sunT1 -all command. I'm specifically > > interested in getting > > parahippocampal and perirhinal ROIs for each individual. It appears that > > the parcellation is > correct > > for the left hemisphere but not for the right hemisphere... I found that > > there were also > mislabeling > > for precentral and postcentral gyrus (as easy gyri to identify), and that > > regardless of if I > looked > > at the aparc.annot or the aparc.DKTatlas.annot parcellation scheme. > > > > Is there any reason why I have this systematic mistake? Attached is the > > example for one subject > > (others looked very similar). > > > > > > Thanks > > > > > > Amal > > > > > >___________________________________________________________________________________________________ > _ > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > >
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