Hi Amal
we need the entire directory tree for that subject
cheers
Bruce
On Wed, 21 Feb 2018, Amal
Achaibou wrote:
Hi,
Yes I've seen it for multiple subjects.
I'm using version 6.
Here are the results for one participants, let me know if you need any other
file.
Thanks
Amal
____________________________________________________________________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Sent: Thursday, February 15, 2018 8:37 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Problem with cortical parcellation of rh but not lh
Hi Amal
this happens for multiple subjects? What version are you using? I have
only ever seen this very rarely and usually for an atypical (e.g.
multiple central sulci) folding pattern. Can you upload a subject so I
can take a look?
cheers
Bruce
On Tue, 13 Feb 2018, Amal Achaibou wrote:
>
> Hello,
>
> I'm new to freesurfer and have been trying to use it for cortical
parcellation of individual T1s
> running recon-all -s subID -i sunT1 -all command. I'm specifically interested
in getting
> parahippocampal and perirhinal ROIs for each individual. It appears that the
parcellation is
correct
> for the left hemisphere but not for the right hemisphere... I found that
there were also
mislabeling
> for precentral and postcentral gyrus (as easy gyri to identify), and that
regardless of if I
looked
> at the aparc.annot or the aparc.DKTatlas.annot parcellation scheme.
>
> Is there any reason why I have this systematic mistake? Attached is the
example for one subject
> (others looked very similar).
>
>
> Thanks
>
>
> Amal
>
>
>___________________________________________________________________________________________________
_
>
>
>
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