Can you tar up just the rh.aparc.stats files and send them to me?
On 12/21/2017 03:41 PM, Maksimovskiy, Arkadiy wrote: > > Hi All, > > I wanted to follow up on this thread because I have been getting a > similar type of an error. > > Here is the info from the terminal: > > [arkadiysimac:Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits] > > amaksimovskiy% aparcstats2table --subjects SILVA033 SILVA035 SILVA039 > SILVA040 SILVA041 SILVA044 SILVA046 SILVA048 SILVA049 SILVA050 > SILVA051 SILVA052 --hemi rh --meas volume --parc aparc --tablefile > Desikan_rh_volume_table.Dec17.txt > > SUBJECTS_DIR : > /Volumes/silverilab/Arkadiy/Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits > > Parsing the .stats files > > Traceback (most recent call last): > > File "/Applications/freesurfer/bin/aparcstats2table", line 376, in > <module> > > parc_measure_map = parsed.parse(options.meas) > > File "/Applications/freesurfer/bin/fsutils.py", line 215, in parse > > val = float(strlist[self.measure_column_map[measure]]) > > IndexError: list index out of range > > Note: If I run the “aparcstats2table” command separately for each > file, an error does not occur (i.e. when I do “aparcstats2table > asegstats2table -s SILVA033 --meas volume --stats wmparc.stats > --tablefile Subcortical_WM_Volume1.Dec17_SILVA033.txt). > > I would love to hear if anyone has solutions for this. > > > Thanks, > > Arkadiy > > -- > > Arkadiy L. Maksimovskiy, Ph.D. > > Postdoctoral Research Fellow > McLean Imaging Center, McLean Hospital > Department of Psychiatry, Harvard Medical School > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
