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xml2/libxml2.a jpeg/libjpeg.a tiff/libtiff.a expat/libexpat.a
LIBS_MNI =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/current/lib/libvolume_io.a
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/current/lib/libminc.a
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/current/lib/libnetcdf.a
LIBS_NIFTI =
LIBS_OPEN64 =
LIBS_OPENGL = -lGLU -lGL -L/lib64 -lX11 -lm
LIBS_TCL = -lBLT -ltix8.1.8.4 -ltk8.4 -ltcl8.4
LIBS_TCL_OPENGL = -lBLT -ltix8.1.8.4 -ltk8.4 -ltcl8.4 -lGLU -lGL -L/lib64 -lX11
-lm
LIBS_VXL = -lvnl_algo -lvnl -lvcl -lnetlib -lv3p_netlib
LIBS_XAWPLUS = -lXt -lXpm -lXawPlus
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LIB_BLAS = /usr/lib64/libblas.a
LIB_BLT = -lBLT
LIB_BLT_JPEG =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tiffjpegglut/current/lib/libjpeg.a
LIB_CRYPT = -lcrypt
LIB_CUDA =
LIB_EXPAT =
LIB_G2C_A =
LIB_GFORTRAN = -lgfortran
LIB_JPEG =
LIB_LAPACK = /usr/lib64/liblapack.a
LIB_NETCDF =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/current/lib/libnetcdf.a
LIB_TCL = -ltcl8.4
LIB_TIFF =
LIB_TIX = -ltix8.1.8.4
LIB_TK = -ltk8.4
LIB_UUID = /usr/lib64/libuuid.so
LN_S = ln -s
LTLIBOBJS =
MAKEINFO = ${SHELL} /builddir/build/BUILD/freesurfer-6.0.0/config/missing
makeinfo
MKDIR_P = /usr/bin/mkdir -p
MNI_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/1.5/include
MNI_DIR = /builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/1.5
MNI_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/mni/1.5/lib
MOC =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin/moc
MPI_CFLAGS =
MPI_DIR =
MPI_LIB =
MPI_LIBS =
NIFTI_CFLAGS =
NIFTI_DIR =
NIFTI_LIB =
NIFTI_LIBS =
NVCC =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/CUDA/current/bin/nvcc
NVCCFLAGS = -arch sm_11 --ptxas-options=-v -g
OBJEXT = o
OPENCL_CFLAGS =
OPENCL_LIBS =
OPENCV_CXXFLAGS =
OPENCV_DIR = no
OPENCV_LIBS =
OPENMP_FLAG = -fopenmp
OS = Linux
OS_CPPFLAGS =
OS_LDFLAGS =
PACKAGE = freesurfer
PACKAGE_BUGREPORT = freesurfer@nmr.mgh.harvard.edu
PACKAGE_NAME = Freesurfer
PACKAGE_STRING = Freesurfer stable6
PACKAGE_TARNAME = freesurfer
PACKAGE_URL =
PACKAGE_VERSION = stable6
PATH_SEPARATOR = :
PETSC_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/petsc/current/include
PETSC_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/petsc/current
PETSC_LIB =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/petsc/current/lib
PETSC_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/petsc/current/lib
POW_LIB =
PTHREAD_CC = gcc
PTHREAD_CFLAGS =
PTHREAD_LIBS =
QMAKE =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin/qmake
QT_CFLAGS = -pipe -O2 -Wall -W -D_REENTRANT -fPIC $(QT_DEFINES)
QT_CPPFLAGS = -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB
-DQT_SCRIPT_LIB -DQT_SCRIPTTOOLS_LIB -DQT_CORE_LIB -I. -I.
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtOpenGL
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtWidgets
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtGui
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtScript
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtScriptTools
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtCore
-I.
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/mkspecs/linux-g++
QT_CXXFLAGS = -pipe -O2 -std=gnu++0x -Wall -W -D_REENTRANT -fPIC $(QT_DEFINES)
QT_DEFINES = -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB
-DQT_SCRIPT_LIB -DQT_SCRIPTTOOLS_LIB -DQT_CORE_LIB
QT_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin/..
QT_INCPATH = -I. -I.
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtOpenGL
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtWidgets-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtGui
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtScript
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtScriptTools
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/include/QtCore
-I.
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/5.6.2/5.6/gcc_64/mkspecs/linux-g++
QT_LDFLAGS = -Wl,-O1
-Wl,-rpath,/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/lib
-Wl,-rpath-link,/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/lib
QT_LFLAGS = -Wl,-O1
-Wl,-rpath,/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/lib
-Wl,-rpath-link,/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/lib
QT_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/lib
-lQt5OpenGL -L/usr/lib64 -lQt5Widgets -lQt5Gui -lQt5Script
-L/usr/pubsw/packages/qt/5.6.2/5.6/gcc_64/lib -lQt5ScriptTools -lQt5Core -lGL
-lpthread
QT_PATH =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin
QT_VERSION_MAJOR = 4
RANLIB = ranlib
RCC =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin/rcc
SET_MAKE =
SHARED_CFLAGS = -fPIC
SHARED_LDFLAGS = -shared
SHELL = /bin/sh
STRIP = strip
TCL_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tcltktixblt/current/include
TCL_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tcltktixblt/current
TCL_LIB =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tcltktixblt/current/lib
TCL_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tcltktixblt/current/lib
TEEM_32BIT = 0
TEEM_DIO = 0
TEEM_ENDIAN = 1234
TEEM_QNANHIBIT = 1
TESTS_ENVIRONMENT = SURFER_FRONTDOOR=1
LD_LIBRARY_PATH=/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/tcltktixblt/current/lib:/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/lib/vtk-5.6:/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/cppunit/current/lib
TIFF_CFLAGS =
TIFF_LIBS =
TIXWISH =
UIC =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/qt/current/bin/uic
VERSION = stable6
VTK_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/include/vtk-5.6
VTK_COCOA_CFLAGS =
VTK_COCOA_CXXFLAGS =
VTK_COCOA_DIR =
VTK_COCOA_LIB = NO
VTK_COCOA_LIBS = -LNO
VTK_COCOA_LIB_VTK =
VTK_CXXFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/include/vtk-5.6
VTK_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current
VTK_EXPAT_LIB = ../expat/libexpat.a
VTK_FREETYPE_LIB = -lfreetype
VTK_HDF5_LIB =
VTK_JPEG_LIB = ../jpeg/libjpeg.a
VTK_LIB =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/lib/vtk-5.6
VTK_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/lib/vtk-5.6
VTK_LIB_VTK =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vtk/current/lib/vtk-5.6
VTK_LSDYNA_LIB =
VTK_METAIO_LIB = -lvtkmetaio
VTK_MPEG2ENCODE_LIB =
VTK_NETCDFCXX_LIB =
VTK_PNG_LIB = -lvtkpng
VTK_SQLITE_LIB = -lvtksqlite
VTK_TIFF_LIB = ../tiff/libtiff.a
VTK_VERDICT_LIB = -lvtkverdict
VTK_Z_LIB = -lvtkzlib
VXL_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/include/vxl/core
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/include/vxl/vcl
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/include/vxl/v3p/netlib
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/include/vxl/v3p/netlib/opt
VXL_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current
VXL_LIB =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/lib
VXL_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/vxl/current/lib
WXWIDGETS_CFLAGS =
-I/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/wx/include/gtk2-ansi-release-static-2.8
-I/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/include/wx-2.8
-D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -D__WXGTK__ -pthread
WXWIDGETS_CXXFLAGS =
-I/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/wx/include/gtk2-ansi-release-static-2.8
-I/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/include/wx-2.8
-D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D_LARGEFILE_SOURCE=1 -D__WXGTK__ -pthread
WXWIDGETS_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/wxWidgets/current
WXWIDGETS_GL_LIBS = -L/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib -pthread
-L/usr/X11R6/lib64 -L/usr/lib64
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_gl-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_base-2.8.a -lGL -lGLU -lz
-ldl -lm
WXWIDGETS_LIBS = -L/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib -pthread
-L/usr/X11R6/lib64
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_richtext-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_aui-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_xrc-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_qa-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_html-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_adv-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_gtk2_core-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_base_xml-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_base_net-2.8.a
/usr/pubsw/packages/wxWidgets/wxGTK-2.8.9/lib/libwx_base-2.8.a
-Wl,--export-dynamic -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0
-lgdk_pixbuf-2.0 -lpangoxft-1.0 -lpangox-1.0 -lpango-1.0 -lgobject-2.0
-lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lXinerama -lXxf86vm -lSM -lpng
../jpeg/libjpeg.a ../tiff/libtiff.a ../expat/libexpat.a -lz -ldl -lm
-lwx_gtk2_gl-2.8
WXWIDGETS_OPTIONAL_LIBS =
XAWPLUS_CFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/xawplus/current/include
XAWPLUS_CXXFLAGS =
-I/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/xawplus/current/include
XAWPLUS_DIR =
/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/xawplus/current
XAWPLUS_LIBS =
-L/builddir/build/BUILD/freesurfer-6.0.0/centos6-x86_64-packages/xawplus/current/lib
XMKMF =
XMLLINT = xmllint
XXD =
X_LIBS = -L/lib64 -lX11 -L/lib64 -lXmu
abs_builddir = /builddir/build/BUILD/freesurfer-6.0.0/lta_convert
abs_srcdir = /builddir/build/BUILD/freesurfer-6.0.0/lta_convert
abs_top_builddir = /builddir/build/BUILD/freesurfer-6.0.0
abs_top_srcdir = /builddir/build/BUILD/freesurfer-6.0.0
ac_ct_CC = gcc
ac_ct_CXX = g++
ac_ct_F77 = gfortran
acx_pthread_config =
am__include = include
am__leading_dot = .
am__quote =
am__tar = tar --format=ustar -chf - "$$tardir"
am__untar = tar -xf -
bindir = /usr/bin
build = x86_64-redhat-linux-gnu
build_alias = x86_64-redhat-linux-gnu
build_cpu = x86_64
build_os = linux-gnu
build_vendor = centos4
builddir = .
datadir = /usr/share
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = /usr
gl_cflags =
gl_libs =
host = Linux-centos4_x86_64
host_alias = x86_64-redhat-linux-gnu
host_cpu = x86_64
host_os = linux-gnu
host_vendor = centos4
htmldir = ${docdir}
includedir = /usr/include
infodir = /usr/share/info
install_sh = ${SHELL} /builddir/build/BUILD/freesurfer-6.0.0/config/install-sh
libdir = /usr/lib64
libexecdir = /usr/libexec
localedir = ${datarootdir}/locale
localstatedir = /var
mandir = /usr/share/man
mkdir_p = $(MKDIR_P)
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /opt/freesurfer/6.0.0
program_transform_name = s&^&&
psdir = ${docdir}
sbindir = /usr/sbin
sharedstatedir = /var/lib
srcdir = .
sysconfdir = /etc
target = x86_64-redhat-linux-gnu
target_alias =
target_cpu = x86_64
target_os = linux-gnu
target_vendor = redhat
top_build_prefix = ../
top_builddir = ..
top_srcdir = ..
AM_CFLAGS = -I$(top_srcdir)/include
AM_CXXFLAGS = -I$(top_srcdir)/include
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foo_DATA = lta_convert.help.xml
foo2dir = $(prefix)/docs/html
foo2_DATA = lta_convert.help.xml.html
lta_convert_SOURCES = lta_convert.cpp
lta_convert_LDADD = $(addprefix $(top_builddir)/, $(LIBS_MGH))
lta_convert_LDFLAGS = $(OS_LDFLAGS)
# Our release target. Include files to be excluded here. They will be
# found and removed after 'make install' is run during the 'make
# release' target.
EXCLUDE_FILES =
all: $(BUILT_SOURCES)
$(MAKE) $(AM_MAKEFLAGS) all-am
.SUFFIXES:
.SUFFIXES: .cpp .lo .o .obj
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(top_srcdir)/Makefile.extra
$(am__configure_deps)
@for dep in $?; do \
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echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu lta_convert/Makefile'; \
$(am__cd) $(top_srcdir) && \
$(AUTOMAKE) --gnu lta_convert/Makefile
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cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
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echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
$(am__depfiles_maybe)'; \
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
$(am__depfiles_maybe);; \
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$(top_srcdir)/Makefile.extra:
$(top_builddir)/config.status: $(top_srcdir)/configure
$(CONFIG_STATUS_DEPENDENCIES)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(top_srcdir)/configure: $(am__configure_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
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@$(NORMAL_INSTALL)
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if test -n "$$list"; then \
echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
$(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
fi; \
for p in $$list; do echo "$$p $$p"; done | \
sed 's/$(EXEEXT)$$//' | \
while read p p1; do if test -f $$p \
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sed -e 'p;s,.*/,,;n;h' \
-e 's|.*|.|' \
-e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
sed 'N;N;N;s,\n, ,g' | \
$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
{ d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
if ($$2 == $$4) files[d] = files[d] " " $$1; \
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$(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS)
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files=`for p in $$list; do echo "$$p"; done | \
sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
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test -n "$$list" || exit 0; \
echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
cd "$(DESTDIR)$(bindir)" && rm -f $$files
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echo " rm -f" $$list; \
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* Oct 04, 2017, at 02:01:13 AM, Hoopes, Andrew <ahoo...@mgh.harvard.edu> wrote:
> If you cd into BUILD/freesurfer-6.0.0/lta_convert, does the file
> lta_convert.help.xml.h exist?
> Also, run ‘make' while in the lta_convert directory to see if the error
> output provides more details. If not, can you send me the contents of
> BUILD/freesurfer-6.0.0/lta_convert/Makefile?
>
> thanks
> Andrew
>
> On Oct 3, 2017, at 1:16 PM, Sol Jerome
> <s...@utdallas.edu<mailto:s...@utdallas.edu>> wrote:
>
> I think so. I am actually attempting to build an RPM. Here is my spec
> file:
>
>
> Name: freesurfer
> Version: 6.0.0
> Release: 1%{?dist}
> Summary: FreeSurfer Software Suite
>
> License: Proprietary
> URL: https://surfer.nmr.mgh.harvard.edu/
> Source0:
> https://github.com/freesurfer/freesurfer#/%{name}-%{version}.tar.gz
> Source1: centos6-x86_64-packages.tar.gz
>
> BuildRequires: freetype-devel, gcc-gfortran, libtool, libuuid-devel,
> libXaw-devel, libXi-devel, mesa-libGLU-devel, netcdf-devel, tcsh
> BuildRequires: uuid-c++-devel, libXmu-devel, libpng-devel, lapack-static,
> blas-static
> #Requires:
>
> %description
> An open source software suite for processing and analyzing (human)
> brain MRI images.
>
>
> %prep
> %setup -q -a1
>
> %build
> ./setup_configure
> %configure --disable-Werror --with-pkgs-dir=$(pwd)/centos6-x86_64-packages
> --prefix=/opt/%{name}/%{version}
> --with-mni-dir=$(pwd)/centos6-x86_64-packages/mni/1.5
>
> %install
> make install DESTDIR=%{buildroot}
>
> %files
> %doc
>
> %changelog
> * Thu Sep 28 2017 Sol Jerome <s...@utdallas.edu<mailto:s...@utdallas.edu>> -
> 6.0.0-1
> - Initial freesurfer RPM
>
>
>
>
>
>
> Thanks,
> Sol
>
> * Oct 03, 2017, at 15:42:12 PM, Hoopes, Andrew
> <ahoo...@mgh.harvard.edu<mailto:ahoo...@mgh.harvard.edu>> wrote:
> Hi Sol,
>
> I don't recognize this error, but will look into it. Have you set up the
> required system libraries and library dependencies described in
> https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page ?
>
> Andrew
>
>
> On Oct 2, 2017, at 5:55 PM, Sol Jerome
> <s...@utdallas.edu<mailto:s...@utdallas.edu><mailto:s...@utdallas.edu>> wrote:
>
> Hi,
>
> I'm trying to build freesurfer on centos7 and I'm pretty sure that this
> failure is due to a missing build dependency. Can someone please help me
> determine what I'm missing?
>
> Making all in lta_convert
> make[2]: Entering directory
> `/builddir/build/BUILD/freesurfer-6.0.0/lta_convert'
> make[2]: Leaving directory
> `/builddir/build/BUILD/freesurfer-6.0.0/lta_convert'
> make[2]: *** No rule to make target `lta_convert.help.xml.h', needed by
> `all'. Stop.
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/builddir/build/BUILD/freesurfer-6.0.0'
> make: *** [all] Error 2
>
>
>
> Thanks,
> Sol
> _______________________________________________
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>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
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> but does not contain patient information, please contact the sender and
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>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
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> but does not contain patient information, please contact the sender and
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> dispose of the e-mail.
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