If I accurately understand the recon-all script, then -noaseg sets
UseAseg=0, but "autorecon2-noaseg" is a different flag, which only sets the
following things.
case "-autorecon2-cp":
case "-autorecon2-noaseg":
case "-autorecon2-wm":
set DoNormalization2 = 1;
set DoSegmentation = 1;
set DoFill = 1;
set DoTessellate = 1;
set DoSmooth1 = 1;
set DoInflate1 = 1;
set DoQSphere = 1;
set DoFix = 1;
set DoMaskBFS = 1;
set DoWhiteSurfs = 1;
set DoSmooth2 = 1;
set DoInflate2 = 1;
set DoSegStats = 0;
set DoCurvStats = 1;
breaksw
Best Regards,
Gabor
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