Hi Gabor

if you fix the aseg labels I think it should correct the midline problem (rerun autorecon2-wm autorecon3 I think)

cheers
Bruce

On Mon, 25 Sep 2017, Gabor Perlaki wrote:

Here are links to images showing the bad midline cut.
Could anybody help me how to solve this issue? The main cause seems to be
asymmetric lateral ventricles.

Best,
Gabor

2017-09-23 8:18 GMT+02:00 Gabor Perlaki <petzinger.ga...@gmail.com>:
      Dear all,
Here is my question again. Somehow, it didn't appear on the Freesurfer
forum. I'm resending it without the attachments.

 
      I've a subject, where the midline cut is bad (see the
      attached pictures), therefore the segmented left lateral
      ventricle also includes considerable number of voxels from
      the right one.
      Is it possible to correct it somehow?






--
Gabor Perlaki
research associate
Diagnostic Center of Pécs
H-7623 Pécs, Rét str. 2.
Tel.: 0036-30-2084367
E-mail: petzinger.ga...@gmail.com

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