On 08/08/2017 03:42 PM, Zach Humphrey wrote: > Hello All, > > I have been attempting to convert Label files generated using > mri_annotation2label into surface files for use in external programs. > In order to do this I first need to convert the label files into > freesurfer binary. I have attempted to use the mri_label2vol function > to generate an mgz file which could then be converted into freesurfer > binary but this has resulted in mgz files which depict a solid cube > rather than any brain structure. Any ideas as to why this could be? I don't understand what this means. Can you elaborate or share a pic? > > I would also prefer to avoid ever converting the label files to a > volume as converting the volume file to a surface file results in a > lower quality than if the file has been maintained as a surface file > throughout. Is there any way to use the Desikan Atlas to "divide" say > the lh.pial surface file and generate a number of .pial files each > consisting of one of the regions described by the Desikan Atlas? > > Thanks, > Zachary Humphrey > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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