Hello FreeSurfer experts, I am trying to run recon-all on a nifti file converted from PAR/SEC using dcm2niix, and this error came up pretty soon after the script started to run;
>> mri_convert.bin >> /home/lab/Desktop/freesurfer/subjects/sub-06_run-01_T1w.nii.gz >> /home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/lab/Desktop/freesurfer/subjects/sub-06_run-01_T1w.nii.gz... TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (-0, 0.916013, -0.401149) k_ras = (0, 0.401149, 0.916013) writing to /home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Tue Aug 8 17:42:13 EDT 2017 Found 1 runs /home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! I am pretty inexperienced with FreeSurfer, but does this error mean I need to slice my file? I would really appreciate if someone could give me some ideas for commands to use. Thank you all! Best, Idil
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