Hi I would like to extract cooridantes of "aparc.a2009s+aseg.mgz" file. This file is stored in the mri folder. Would you please help me in this regards?
kind regards Mamun On Thu, Jul 27, 2017 at 9:36 AM, Redwan Maatoug <redwanmaat...@gmail.com> wrote: > Hi Doug, > > Thank you for your reply, > I have used the tool *surf_cluster* to have the MNI coordinates. > Is it a good alternative to *mri_cor2label *? > > Thank you very much, > Regards, > Redwan > > On Wed, Jul 26, 2017 at 2:41 PM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> mri_cor2label with extract the coordinates into a label file. The >> coordinates will be in "tkregisterRAS". What coordinate system do you >> want? See >> >> See https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems >> >> >> On 07/25/2017 07:32 PM, Redwan Maatoug wrote: >> > Hi experts, >> > >> > I just want to know a way to extract the coordinates from a ROI mgh >> file. >> > >> > I know that I can load the file with tksurfer but I have 100 .mgh >> > files so if I could run a command line to have the coordinates in a >> > .txt file or in a .m it would be helpful. >> > >> > Thank you, >> > Redwan >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Kind regards Md. Mamun Al-Amin ------------------------------ PhD Candidate, Queensland Brain Institute Building 79, St Lucia QLD 4072
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
