Hi Sanjeev if you label that area "lesion" (left or right) in the aseg.mgz then run -autorecon2-wm -autorecon3 I think it should work. Note that drawing in large regions like that can be very difficult
cheers Bruce On Sat, 22 Jul 2017, Sanjeev Nara wrote: > Hi Freesurfer experts, > > I am using recon -all for parcellating the MRI dataset into different brain > regions. But the freesurfer removes the area's having tumour and creates a > blank hole there. Is it possible to retain the Tumour areas. My goal is to > create a forward model using MRI data. I have attached picture of one subject > and highlighted the missing areas. > > Any suggestion and solution should be highly appreciated. > > > Best regards > Sanjeev > > Sanjeev Nara > Predoctoral Researcher BCBL > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
