sure. Can you upload the data again to our ftp site? Don't use the filedrop - use ftp and make sure you include the cross and the long of all the timepoints for this subject, and also the coordinates of the location you are seeing the problem

cheers
Bruce


On Tue, 4 Jul 2017, Bronwyn Overs wrote:

Thanks Bruce.

Kind regards,

Bronwyn Overs
Research Assistant

Neuroscience Research Australia

Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265

neura.edu.au

Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to the
NeuRA Magazine


      On 3 Jul 2017, at 11:55 pm, Bruce Fischl
      <fis...@nmr.mgh.harvard.edu> wrote:

Hi Bronwyn

not yet, but we'll get to it soon

cheers
Bruce
On Mon, 3 Jul 2017, Bronwyn Overs wrote:

      Hi Bruce,
      Just wanted to check in on the status of reviewing our
      medial surface
      problem. Any luck so far?
      Kind regards,
      Bronwyn Overs
      Research Assistant
      Neuroscience Research Australia
      Neuroscience Research Australia
      Margarete Ainsworth Building
      Barker Street Randwick Sydney NSW 2031 Australia
      M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
      neura.edu.au
      Follow @neuraustralia on twitter Follow NeuRA on facebook
      Subscribe to the
      NeuRA Magazine

           On 14 Jun 2017, at 9:52 am, Bronwyn Overs
      <b.ov...@neura.edu.au>
           wrote:
      Hi Bruce,
      That's fine, thanks very much.
      Bronwyn Overs
      Research Assistant
      <neura-logo-email.png>
      Neuroscience Research Australia
      Margarete Ainsworth Building
      Barker Street Randwick Sydney NSW 2031 Australia
      M 0411 308 769 T +61 2 9399 1883
      neura.edu.au 
      Twitter | Facebook | Subscribe
___________________________________________________________________________
      _
      From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu>
      To: "Freesurfer support list"
      <freesurfer@nmr.mgh.harvard.edu>
      Sent: Wednesday, 14 June, 2017 00:02:04
      Subject: Re: [Freesurfer] Medial Surface Problem
      thanks Bronwyn
      I got them. It will take a bit for us to get to as this is
      in the long
      stream and we have a new postdoc who will be taking it
      over.
      cheers
      Bruce
      On Tue, 13 Jun
      2017, Bronwyn Overs wrote:
      > Hi Bruce,
      > Sure, files have been dropped again.
      >
      > Kind regards,
      >
      > Bronwyn Overs
      > Research Assistant
      >
      > Neuroscience Research Australia
      >
      > Neuroscience Research Australia
      > Margarete Ainsworth Building
      > Barker Street Randwick Sydney NSW 2031 Australia
      > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
      >
      > neura.edu.au
      >
      > Follow @neuraustralia on twitter Follow NeuRA on
      facebook Subscribe
      to the
      > NeuRA Magazine
      >
      >
      >       On 13 Jun 2017, at 11:44 am, Bruce Fischl
      >       <fis...@nmr.mgh.harvard.edu> wrote:
      >
      > Hi Bronwyn 
      > Can you filedrop it again? I don't think I have it
      > Thanks
      > Bruce
      >
      > On May 15, 2017, at 8:27 PM, Bronwyn Overs
      <b.ov...@neura.edu.au>
      > wrote:
      >
      >       Hi Bruce,
      > Thank you for offering to take a look at this medial
      surface
      > problem.
      >
      > I have uploaded all of the relevant files to through the
      > Martinos Centre FileDrop v2.0 to your email address
      > (fis...@nmr.mgh.harvard.edu). Please let me know if you
      require
      > any additional information.
      >
      > Kind regards,
      >
      > Bronwyn Overs
      > Research Assistant
      >
      > Neuroscience Research Australia
      >
      > Neuroscience Research Australia
      > Margarete Ainsworth Building
      > Barker Street Randwick Sydney NSW 2031 Australia
      > M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265
      >
      > neura.edu.au
      >
      > Follow @neuraustralia on twitter Follow NeuRA on
      facebook
      > Subscribe to the NeuRA Magazine
      >
      >
      >       On 5 May 2017, at 8:25 am, Bruce Fischl
      >       <fis...@nmr.mgh.harvard.edu> wrote:
      >
      > if someone can upload a dataset as well as the exact
      > coordinates of the problem I'll take a look
      >
      > cheers
      > Bruce
      >
      > On Fri, 5 May 2017, Yann Quidé wrote:
      >
      >       Hi all,
      >       We also have the same issue, any
      >       idea/suggestion?
      >       Thanks.
      >       Yann
      >
      >            On 27 Apr 2017, at 9:43 am, Bronwyn Overs
      >       <b.ov...@neura.edu.au>
      >            wrote:
      >       Hi Mailing List,
      >       Still trying to solve the below medial surface
      >       problem. Does anyone
      >       have any ideas?
      >       Kind regards,
      >       Bronwyn Overs
      >       Research Assistant
      >       Neuroscience Research Australia
      >       Neuroscience Research Australia
      >       Margarete Ainsworth Building
      >       Barker Street Randwick Sydney NSW 2031
      >       Australia
      >       M 0411 308 769 T +61 2 9399 1883 F +61 2 9399
      >       1265
      >       neura.edu.au
      >       Follow @neuraustralia on twitter Follow NeuRA
      >       on facebook Subscribe to
      >       the NeuRA Magazine
      >
      >            On 28 Mar 2017, at 10:51 pm, Yann Quidé
      >            <yannqu...@gmail.com> wrote:
      >       Dear all,
      >       I have an equivalent issue with my data. Any
      >       idea on how to fix
      >       this?
      >       Thanks.
      >       Yann
      >
      >            Begin forwarded message:
      >       From: Bronwyn Overs <b.ov...@neura.edu.au>
      >       Subject: Re: [Freesurfer] Medial Surface
      >       Problem
      >       Date: 20 March 2017 10:28:37 am AEDT
      >       To: Freesurfer support list
      >       <freesurfer@nmr.mgh.harvard.edu>
      >       Reply-To: Freesurfer support list
      >       <freesurfer@nmr.mgh.harvard.edu>
      >       Hello again mailing list,
      >       Can anyone address the possible cause of the
      >       medial
      >       surface problem shown below (overestimating of
      >       rh medial
      >       surface, shows up in the long image and not
      >       the tp or base
      >       images). Forgot to mention that I am using
      >       freesurfer v5.3
      >       with an updated mris_make_surfaces binary
      >       (sourced from
      >      thedevelopmentversionat 
ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurf
      er/
      dev_binarie
      >       s/cento
      >       s6_x86_64/ ).
      >       Here is the image again:
      >       <unknown.png>
      >       Kind regards,
      >       Bronwyn Overs
      >       Research Assistant
      >       Neuroscience Research Australia
      >       Neuroscience Research Australia
      >       Margarete Ainsworth Building
      >       Barker Street Randwick Sydney NSW 2031
      >       Australia
      >       M 0411 308 769 T +61 2 9399 1883 F +61 2 9399
      >       1265
      >       neura.edu.au
      >       Follow @neuraustralia on twitter Follow NeuRA
      >       on facebook
      >       Subscribe to the NeuRA Magazine
      >
      >            On 6 Mar 2017, at 1:17 pm, Bronwyn Overs
      >            <b.ov...@neura.edu.au> wrote:
      >       Hi mailing list,
      >       I am currently processing a longitudinal image
      >       and
      >       have come across a problem at the medial
      >       surface in
      >       the long image (step 3). As you can see in the
      >       attached image, the rh medial surface has been
      >       significantly overestimated and extends into
      >       the lh
      >       surface. This error showed up only in only 1
      >       of the
      >       2 long images for this subject, and both the
      >       time-point images and the base are perfectly
      >       fine.
      >       Do you know why this is happening? 
      >       <Screen Shot 2017-03-06 at 1.09.53 pm.png>
      >       Kind regards,
      >       Bronwyn Overs
      >       Research Assistant
      >       Neuroscience Research Australia
      >       Neuroscience Research Australia
      >       Margarete Ainsworth Building
      >       Barker Street Randwick Sydney NSW 2031
      >       Australia
      >       M 0411 308 769 T +61 2 9399 1883 F +61 2 9399
      >       1265
      >       neura.edu.au
      >       Follow @neuraustralia on twitter Follow NeuRA
      >       on
      >       facebook Subscribe to the NeuRA Magazine
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