Hi Bruce, Sure, files have been dropped again. Kind regards, Bronwyn Overs Research Assistant
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au <http://neura.edu.au/> <https://twitter.com/neuraustralia> <https://www.facebook.com/NeuroscienceResearchAustralia> <http://www.neura.edu.au/help-research/subscribe> > On 13 Jun 2017, at 11:44 am, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > Hi Bronwyn > Can you filedrop it again? I don't think I have it > Thanks > Bruce > > On May 15, 2017, at 8:27 PM, Bronwyn Overs <b.ov...@neura.edu.au > <mailto:b.ov...@neura.edu.au>> wrote: > >> Hi Bruce, >> >> Thank you for offering to take a look at this medial surface problem. >> >> I have uploaded all of the relevant files to through the Martinos Centre >> FileDrop v2.0 to your email address (fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>). Please let me know if you require any >> additional information. >> Kind regards, >> Bronwyn Overs >> Research Assistant >> >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >> >> neura.edu.au <http://neura.edu.au/> >> <https://twitter.com/neuraustralia> >> <https://www.facebook.com/NeuroscienceResearchAustralia> >> <http://www.neura.edu.au/help-research/subscribe> >>> On 5 May 2017, at 8:25 am, Bruce Fischl <fis...@nmr.mgh.harvard.edu >>> <mailto:fis...@nmr.mgh.harvard.edu>> wrote: >>> >>> if someone can upload a dataset as well as the exact coordinates of the >>> problem I'll take a look >>> >>> cheers >>> Bruce >>> >>> On Fri, 5 May 2017, Yann Quidé wrote: >>> >>>> Hi all, >>>> We also have the same issue, any idea/suggestion? >>>> Thanks. >>>> Yann >>>> >>>> On 27 Apr 2017, at 9:43 am, Bronwyn Overs <b.ov...@neura.edu.au >>>> <mailto:b.ov...@neura.edu.au>> >>>> wrote: >>>> Hi Mailing List, >>>> Still trying to solve the below medial surface problem. Does anyone >>>> have any ideas? >>>> Kind regards, >>>> Bronwyn Overs >>>> Research Assistant >>>> Neuroscience Research Australia >>>> Neuroscience Research Australia >>>> Margarete Ainsworth Building >>>> Barker Street Randwick Sydney NSW 2031 Australia >>>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>>> neura.edu.au <http://neura.edu.au/> >>>> Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to >>>> the NeuRA Magazine >>>> >>>> On 28 Mar 2017, at 10:51 pm, Yann Quidé >>>> <yannqu...@gmail.com <mailto:yannqu...@gmail.com>> wrote: >>>> Dear all, >>>> I have an equivalent issue with my data. Any idea on how to fix >>>> this? >>>> Thanks. >>>> Yann >>>> >>>> Begin forwarded message: >>>> From: Bronwyn Overs <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> >>>> Subject: Re: [Freesurfer] Medial Surface Problem >>>> Date: 20 March 2017 10:28:37 am AEDT >>>> To: Freesurfer support list >>>> <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>> >>>> Reply-To: Freesurfer support list >>>> <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>> >>>> Hello again mailing list, >>>> Can anyone address the possible cause of the medial >>>> surface problem shown below (overestimating of rh medial >>>> surface, shows up in the long image and not the tp or base >>>> images). Forgot to mention that I am using freesurfer v5.3 >>>> with an updated mris_make_surfaces binary (sourced from >>>> the development versionat >>>> ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/cento >>>> <ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/cento> >>>> s6_x86_64/ ). >>>> Here is the image again: >>>> <unknown.png> >>>> Kind regards, >>>> Bronwyn Overs >>>> Research Assistant >>>> Neuroscience Research Australia >>>> Neuroscience Research Australia >>>> Margarete Ainsworth Building >>>> Barker Street Randwick Sydney NSW 2031 Australia >>>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>>> neura.edu.au <http://neura.edu.au/> >>>> Follow @neuraustralia on twitter Follow NeuRA on facebook >>>> Subscribe to the NeuRA Magazine >>>> >>>> On 6 Mar 2017, at 1:17 pm, Bronwyn Overs >>>> <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> wrote: >>>> Hi mailing list, >>>> I am currently processing a longitudinal image and >>>> have come across a problem at the medial surface in >>>> the long image (step 3). As you can see in the >>>> attached image, the rh medial surface has been >>>> significantly overestimated and extends into the lh >>>> surface. This error showed up only in only 1 of the >>>> 2 long images for this subject, and both the >>>> time-point images and the base are perfectly fine. >>>> Do you know why this is happening? >>>> <Screen Shot 2017-03-06 at 1.09.53 pm.png> >>>> Kind regards, >>>> Bronwyn Overs >>>> Research Assistant >>>> Neuroscience Research Australia >>>> Neuroscience Research Australia >>>> Margarete Ainsworth Building >>>> Barker Street Randwick Sydney NSW 2031 Australia >>>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>>> neura.edu.au <http://neura.edu.au/> >>>> Follow @neuraustralia on twitter Follow NeuRA on >>>> facebook Subscribe to the NeuRA Magazine >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for >>>> the person to whom it is >>>> addressed. If you believe this e-mail was sent to >>>> you in error and the e-mail >>>> contains patient information, please contact the >>>> Partners Compliance HelpLine at >>>> http://www.partners.org/complianceline >>>> <http://www.partners.org/complianceline> . If the >>>> e-mail was sent to you in error >>>> but does not contain patient information, please >>>> contact the sender and properly >>>> dispose of the e-mail. >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for the >>>> person to whom it is >>>> addressed. If you believe this e-mail was sent to you in >>>> error and the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline >>>> <http://www.partners.org/complianceline> . If the e-mail was >>>> sent to you in error >>>> but does not contain patient information, please contact >>>> the sender and properly >>>> dispose of the e-mail. >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for the person >>>> to whom it is >>>> addressed. If you believe this e-mail was sent to you in error >>>> and the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline >>>> <http://www.partners.org/complianceline> . If the e-mail was sent >>>> to you in error >>>> but does not contain patient information, please contact the >>>> sender and properly >>>> dispose of the e-mail. >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> The information in this e-mail is intended only for the person to whom >>>> it is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline >>>> <http://www.partners.org/complianceline> . If the e-mail was sent to you >>>> in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline >>> <http://www.partners.org/complianceline> . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
